I don't see why you would go a long time without squating with westside, actually you should be squating every week on DE Day.
Also you can really focus on the squat by using different variations. Read the articles at elitefts there are several specific layouts for football programs.
case in point: from Davidson College Football Program
Max Effort Squat
Week 1 ? Work up to a 5RM on free squat
Week 2 ? Work up to a 1RM on a box squat (parallel)
Week 3 ? Work up to a 3RM on a free squat
Week 4 ? Work up to a 1RM on a front box squat (parallel)
Week 5 ? Work up to a 1RM on a Zercher squat
Week 6 ? No ME work
After the main max effort movement, the following was done;
? 1 exercise for the hamstrings (Romanian deadlift or glute ham raise) ? 3x10
? Box jumps ? 3x5
? 1 exercise for the lower back (back extensions, good mornings, pull-throughs) ? 3x10
? 1 weighted abdominal exercise. This was usually weighted sit-ups ? 3x10