Personally, I've never done a Chad Waterbury program but have done a HFT program I devised myself. I must say that the strength gains are great, but for hypertrophy the Superhero program I am doing by CT is unreal for hypertrophy. It's the first time my delts and traps have grown in about 3 or 4 monthes and it's been 3 weeks, christ it's unreal. Strength is rather good. Intensity is nice.
I prefer "doing" CT's programs because I don't really have as much fun with Full bodies. But I WILL be doing both kinds, I think that the reason I started progressing again is due to changing things up that way. I went for a mon(delt/chest/back/traps)/tues(legs, arms)/thurs(same as mon)/fri(same as tues)split for about 4 weeks, then went to full body 3x a week, with intensification blocks fir 12 weeks, and am now doing "Superhero" I'm having great gains now.