From your experience is this going to be too much pulling in the long run? Is there anything you would recommend? I don't want to sound like another one of these fucks trying to bastardize your program, I just to want to keep getting bigger and stronger.
Answer: Nope - if you can't squat, you can't squat. Who cares? The day a man gives into retarded dogma of the 1" internet pud tuckers is the day you pack it in and swallow lead. You have gone through too much to do that. You adapt to your situation and attack what you can do.
I do the Triumvirate with Joker Sets and First Set Last when I'm feeling good because its what works best for me. I at the very least know what assistance exercises I need to progress in the Bench, OHP, and Deadlift. Any recommendations for programming would be highly appreciated.
Base Program: 5's PRO, 5x5 FSL (on all lifts), assistance: rows, chins, dips, curls, push-ups, back raises, ab work
The base program lasts for 3-6 weeks. This is followed by 3-6 weeks of a variation of the above or something out of left field:
FSL x 50
Rule of 10
PR's + bodyweight
There are a myriad of options but the bottom line is the VAST majority of your gains will happen with base program. At least with all the people I work with and those that actually listen to how to do the program properly.
Anyway, MAKE SURE you are doing Agile 8 every day, at the very least. Keep up your conditioning. Remember that people that are out of shape are fucking lazy. It takes NO TALENT to be in shape: it just takes a modicum of discipline to do what is necessary.
Good luck - you will be fine as long as you follow your head/heart and not the crowd.